1What type of infections do we repeat specimin cultures to test for cure?
Blood, CSF
Don't test other types, still may have a positive growth despite patient recovery which can lead to excessive antibiotic treatment
2How long do we have to wait before determining treatment failure?
2-3 days of treatment at a minimum, unless a specific test comes back which definitavely says treatment is ineffective
3What is inducible resistance?
Resistance genes are in the bacteria, and are upregulated in response to antibiotic, or downregulated without antibiotic present
In inducible resistance, initial testing may show the bacteria is susceptible, but when dosed in the body, certain antibiotics may induce resistance and cause resistance not seen in laboratory testing
4What are constitutive or depressed mutational resistances?
Resistance where the downregulation of the bacterial resistance genes have been mutated, which makes the bacteria constantly produce it's resistance mechanism at high levels
5What is a loss of porin channel resistance?
Found in gram negative resistance, the bacteria downregulates expression of porin channels found on its outer cell membrane. This makes it harder for drugs to access the cell wall. Not found in gram positive bacteria, as the cell wall is already exposed.
6Mechanism of resistance, porin channel loss
Chromosomal and constitutive, resulting in high level resistance
7Clinical examples of porin channel loss
Carbapenem resistance by Pseudomonas aeruginosa (OprdD porin loss)
Cephalosporin/carbapenem resistance in klebsiella and enterobacter species
8What is increased production of efflux pumps resistance?
Occurs in both gram positive and negative bacteria, although more clinically relevent in gram negative as the double membrane allows more opportunity to pump out drugs. Pumps antibiotics out of the bacteria so it cannot work against it.
9Mechanism of resistance, efflux pump upregulation
chromosomal and either inducible or constitutive, with or low or high level resistance
10What is the most clinically relevent type of bacteria efflux pump?
Resistance nodulation division (RND) family
11What drug should be avoided as monotherapy against pseudomonas aeruginosa?
Flouroquinolones, they are suceptible to many types of efflux pumps, and will likely cause selection of antibiotic resistant pseudomonas if used as monotherapy
12What warning signs on a resistance report point to resistance by drug efflux pumps?
A low level resistance expressed across many classes of antibiotics (eg, resistance to both flouroquinolones and beta lactams)
13What types of bacteria is AcrAB-TolC (aka OqxAB-TolC) efflux pump found in?
E. Coli*
Enterobacter
Klebsiella
14What drugs are primarily effluxed by AcrAB-TolC?
Flouroquinolones and trimethoprim sulfamethoxazole
15What is unique about AcrAB-TolC?
It is an efflux pump which is encoded by a Plasmid in E. Coli, meaning it can be easily transfered between different gram-negative bacteria
16What is mef efflux pump?
macrolide efflux, found in streptococcus pneumoniae (gram postive), which produces low level resistance
Can still be treated with macrolides at higher doses unless it is in the CNS
17What is NorA efflux pump?
Provides low level resistance to early fluoroquinolones (Norfloxacin, ciprofloxacin) in staph aureus. Present in all staph aureus, and treatment with fluoroquinolones will select for high resistance. Makes treatment of MRSA with fluoroquinolones impossible.
18How does cell wall/membrane resistance work?
Chromosomal constitutive resistance that results in low level resistance, ocurring in both positive and negative bacteria, by making the cell wall or membrane harder for drugs to penetrate.
19How does S. aureus get resistance to vancomycin?
Thickening of cell walls which prevents penetration into areas of cell-wall synthesis
20How does Staphylococci and enterococci get resistance to daptomycin?
Change cell membrane consistency to limit interaction
21How does target site alteration resistance work?
Target site in bacteria is altered so antibiotic can't bind. Chromosomal resistance that is typically consitutive but may be inducible, found in both gram positive and negative bacteria. High level resistance.
22How does penicillin resistance in S. Pneumoniae work?
LOW LEVEL resistance through slight alteration of penicillin binding proteins
23How does methicillin resistance in S. aureus work? (MRSA)
High level resistance to all beta lactams except ceftaroline via production of mutant PBP (PBP 2a)
24How does fluoroquinolone resistance occur in gram positive bacteria?
Mutations of either DNA gyrase or topoisomerase IV (or both for high level resistance)
25How does VRE (vancomycin resistanct enterococci) work?
Change in the end terminus of the peptidoglycan amino acids from D-alanine D-alanine to D-alanine D-lactate
26What is MLSb resistance?
macrolide, lincosamide, and group B streptogramin resistance, found in staphylococci and streptococci
erm gene causes methylation of ribosomal binding site
27How to identify erm absent staph and strep?
susceptible to both erythromycin and clindamycin
28How to identify erm constituent staph and strep?
Resistant to both erythromycin and clindamycin
29How to identify erm inducible staph and strep?
Resistant to erythromycin
falsely susceptible to clindamycin
Must then run a D-test to identify if it is actually MLSb
30How does high level resistance to fluoroquinolones happen in gram negative bacteria?
DNA gyrase mutation so it cannot bind
31When to use rifampin as monotherapy?
Never, mutations to RNA polymerase causes high level resistance in both gram negative and positive bacteria
32How can trimethoprim/sulfamethoxazole resistance occur in gram negative/positive bacteria as a focused high level resistance?
Mutated dihydrofolate reductase or dihydropteroate synthase enzymes
33How does production of antibiotic inactivating enzymes resistance work?
Occurs in gram positive and negative, but more clinically significant in gram negative. Chromosomal or plasmid/transposon, and either inducible or constitutive. Results in high level resistance.
34How do aminoglycoside inactivating enzymes work?
plasmid mediated
35What are AmpC beta-lactamases?
chromosomal beta lactamase that Breaks down ampicillin and all other beta lactams. Inducible or constitutive, Found in gram-negative SPACE pathogens
Serratia
Pseudomonas
Acinetobacter and Aeromonas
Citrobacter
Enterobacter (and Klebsiella)* ~10% risk of resistance with these
36What are the preferred therapies for AmpC beta lactamase resistance?
Cefepime
Ceftolozane/Tazobactam
Carbapenems
37What drug do and don't work to inhibit AmpC beta lactamase?
Avibactam, Relebactam, and Vaborbactam all work
Clavulanic acid, sulbactam, and tazobactam do not
38What are extended spectrum beta lactamases (ESBLs)?
Plasmid borne beta lactamase, which can confer high or low level resistance. Break down all beta lactams except carbapenems
39What bacteria most commonly have ESBL?
Klebsiella and E.coli
40What is CTX-M
The most common type of ESBL found on E.Coli.
41What beta lactamase inhibitors work against ESBL?
All of them in vitro, but limited clinical data
Again, avi, rele, and vaborbactam are the most effeciacious
42What are the preferred beta lactams for ESBL?
Carbapenems
Ceftolozine/tazobactam
ceftazidime/avibactam
Ampicillin/sulbactam and piperacillin/tazobactam may be ok for UTIs
43What are the preferred non-beta lactams for ESBL?
Must confirm susceptibility and site of infection
for systemic infections: fluoroquinolones and TMP/SMX
For UTIs: Fluoroquinolones, TMP/SMX, aminoglycosides, fosfomycin, nitrofurantoin
44How do you identify if a carbapenem resistant enterobacterales (CRE) is not a carbapenemase producer?
If it is resistant to ertapenem (MICs >2mg/L) and susceptible to meropenem (MICs <1mg/L), then it is likely not carbapenemase producing
45Preferred treatment for non-carbapenamase producing CREs
Extended infusion of meropenem
46How do you identify if a carbapenem resistant enterobacterales (CRE) is a carbapenemase producer?
If it is resistant to both ertapenem and meropenem, then it is likely carbapenemase producing
47Preferred treatment for carbapenamase producing CREs
Ceftazidime-avibactam
then, meropenem-vaborbactam, imipenem-cilastatin-relebactam, cefiderocol
if not a bloodstream or UTI infection, can consider tigecycline or eravacycline
48What is the preferred treatment for KPCs?
Meropenem-vaborbactam
Ceftazidime-avibactam (can cause selection of resistance)
49Preferred treatment for OXA-48-likes
Ceftazidime-avibactam
Cefiderocol
50Preferred treatment for metallo-beta-lactamses (NDMs, VIMs, IMPs)
Ceftazidime/avibactam and aztreonam