Topic 6: Enzymes

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1
Catalysts
molecules that speed up reactions by lowering activation energy.
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Catalysts are ___ consumed during reactions.
NOT
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The enzyme is ___ at the end of the reaction.
unchanged
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Enzymes are made of ___.
proteins
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Anything that affects ____ affects the function of the enzyme.
proteins
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Enzyme
Biological catalyst that speeds up reactions that are most often proteins.
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Enzyme can be very ___ to a substrate.
specific
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Substrate
A substance on which an enzyme acts.
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A substrate binds to the ___ on the enzyme.
active site
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Active site
A region on an enzyme that binds to a protein or other substance during a reaction.
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Induced fit
A model of enzyme action where the enzyme's active site changes shape to bind more effectively with its substrate.
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Enzyme substrate complex
A temporary structure formed when a substrate molecule binds to an enzyme's active site.
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Two types of enzyme helpers
Cofactors and coenzymes
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Coenzyme
A nonprotein compound that is necessary for the functioning of an enzyme.
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Cofactor
A substance (other than the substrate) whose presence is essential for the activity of an enzyme.
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Difference between cofactor and coenzyme
A coenzyme is a specific type of cofactor that is always an organic molecule.
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Cofactors: ___ (necessary for some enzymes to function)
Metallic ions
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Coenzyme: ___ (vitamins)
Organic molecules
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Cofactors bind to the ___ to activate it or binds ___ (opposite site of the active site).
Active site, allosterically
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Types of enzyme activity
Normal binding, competitive inhibition, and noncompetitive inhibition.
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Allosteric site
A binding site on a protein, such as an enzyme or receptor, that is separate from the active site.
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Normal binding
A substrate can bind normally to the active site of an enzyme.
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Competitive inhibition
A competitive inhibitor mimics the substrate, competing for the active site.
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Noncompetitive inhibition
A noncompetitive inhibitor binds to the enzyme away from the active site, altering the shape of the enzyme so the active site functions less effectively if at all.
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Competitive inhibition
Compete for active site.
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Competitive inhibition ___ overridden by adding more substrate.
Can be
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Noncompetitive inhibition
Inhibit without binding to active site (allosteric).
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Noncompetitive inhibition ___ overridden by adding more substrate.
Cannot be
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In noncompetitive inhibition, the inhibitor binding elsewhere leads to shape change (= ___) in the enzyme.
Conformational change
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The substrate ___ fit the active site anymore.
does not
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Conformational change
Shape change
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Environmental conditions that affect enzymes
Temperature, pH, and salt concentration
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Temperature
Determines amount of kinetic energy
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Lower temperature
Less kinetic energy means products form slowly.
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Increasing temperature
Increases kinetic energy and increases activity.
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If temperature is too high
The structure of enzyme denatures and substrate no longer fits properly. Activity decreases.
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pH
Measure of hydrogen ions in solution.
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Low pH (pH of 2)
Acidic
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High pH (pH of 10)
Basic
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Effect of deviations from optimum pH
Charges interfere with 3D structure of enzymes meaning a decline in activity.
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Effect of salt concentration (NaCl)
Inorganic ions interfere with ionic bonds in enzymes.
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Enzyme concentration
More enzymes = faster reaction (as long as substrate is not limiting).
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Substrate concentration
More substrate = increased activity rate (until saturation point).
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Saturation point
Maximum activity where all enzymes are bound with substrate (plateau).
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Gibbs Free Energy
Energy available in a system for a chemical reaction.
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Negative Gibbs Free Energy
Reaction is spontaneous.
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Positive Gibbs Free Energy
Reaction is non-spontaneous (requires energy input).
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Gibbs Free Energy is zero
Forward and reverse reaction rates are equal.
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Entropy (S)
A measure of the system's disorder or randomness.
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Buffer
A solution that resists changes in pH when small amounts of acid or base are added.
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Gibbs Free Energy ___ affected by catalysts or enzymes.
IS NOT
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Outside of optimum environmental conditions
Rates of reactions can slow or enzymes can denature (become non-functional).
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Null hypothesis
There will be no effect.
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Alternative hypothesis
There will be an effect.
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Independent variable (variable that is changed)
x-axis
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Dependent variable (variable that is measured)
y-axis
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