1first line defenses
physical and chemical barriers that block microbial entry
example: skin, mucous membranes
2sensor systems
detect invaders using pattern recognition receptors and the complement system
3effector actions
destroy invaders through mechanisms such as interferon response, phagocytosis, complement activation, inflammatory response and fever
4physical barriers to pathogens
skin: acts as tough water repellent barrier
mucous membranes: line internal tracts and trap microbes
5dermis
tightly woven fibrous connective tissue
6epidermis
multiple layers of epithelial cells; outermost are dead and filled with keratin, repelling water and maintaining a dry environment
7mucous membranes
composed of mucus-producing cells; some have cilia to remove microbes
8antimicrobial substances
salt, lysozyme, peroxidases, lactoferrin and transferrin, defensins
9salt
accumulates on skin from perspiration, creating a hostile environment for microbes
10lysozyme
degrades peptidoglycan in bacterial cell walls
11peroxidases
form antimicrobials by breaking down hydrogen peroxide
12lactoferrin and transferrin
bind iron, limiting microbial access
13defensins
host defense peptides that form pores in microbial membranes
14competitive exclusion
normal microbiota cover binding sites and consume nutrients, preventing pathogen colonization
15production of toxic compounds
some species of microbiota produce fatty acids or bacteriocins that inhibit pathogens
16immune system development
normal microbiota are essential for proper immune system maturation
17disruption
antibiotic use can predispose to infections by Clostridium difficile or Candida albicans
18neutrophils
engulf and destroy bacteria; most abundant and first responders during infection
19basophils
involved in allergic reactions and inflammation; granules contain histamine
20mast cells
similar to basophils; found in tissues
21eosinophils
fight parasitic worms and participate in allergic reactions
22monocytes
circulate in blood and differentiate into macrophages upon entering tissues
23macrophages
sentinel cells found in nearly all tissues; phagocytize debris and invaders
24dendritic cells
sentinel cells that engulf material and present it to adaptive immune cells
25lymphocytes
include B and T cells (adaptive immunity), innate lymphoid cells and natural killer (NK) cells
26surface receptors
proteins that span the cell membrane and transmit signals upon ligand binding
27cytokines
small proteins that act as cell "voices," including changes such as growth, differentiation, movement or cell death
28adhesion molecules
enable cells to adhere to each other, facilitating migration and interaction
29chemokines
direct chemotaxis of immune cells
30colony-stimulating factors (CSFs)
stimulate multiplication and differentiation of leukocytes
31interferons
control viral infections and regulate immune responses
32interleukins
produced by leukocytes; important in both innate and adaptive immunity
33tumor necrosis factor (TNF)
induces inflammation and apoptosis
34PRRs
located on cell surfaces, in phagosomes/endosomes and in the cytoplasm; detect microbial components and cell damage
35TLRs
a type of PRR anchored in membranes of sentinel cells; surface TLRs monitor extracellular environment, while TLRs in phagosomal/endosomal membranes characterize ingested material
36complement system
proteins circulating in blood and tissue fluid named C1 through C9, with activation occuring via three pathways all leading to the formation of C3 contervase which splits C3 into C3a and C3b
37alternative pathway
triggered by C3b binding to foreign cell surfaces
38lectin pathway
pattern recognition molecules (MBLs) bind to mannose on microbial cells
39classical pathway
activated by antibodies bound to antigens
40opsonization
C3b binds to bacterial cells, promoting engulfment by phagocytes
41inflammatory response
C5a attracts phagocytes; C3a and C5a increase blood vessel permeability and induce cytokine release
42lysis of foreign cells
membrane attack complexes (MACs) formed by C5b, C6, C7, C8 and C9 assemble in cell membranes of Gram-negative bacteria
43chemotaxis
phagocytes are recruited by chemoattractants (eg. C5a)
44recognition and attachment
direct: receptors bind mannose
indirect: binding to opsonins like C3b
45engulfment
pseudopods surround the microbe, forming a phagosome
46phagosome maturation and phagolysosome formation
fusion with lysosomes releases digestive enzymes
47destruction and digestion
toxic reactive oxygen species (ROS), nitric oxide, and enzymes degrade the invader
48exocytosis
expulsion of digested remains
49inflammation process
1. vascular changes
2. cellular changes
3. clotting
4. pus formation
50vascular changes
blood vessel diameter increases, causing heat and redness; fluid (exudate) leaks into tissues causing swelling and pain
51cellular changes
cytokines cause endothileal cells to "grab" phagocytes, which move into tissues (diapedesis)
neutrophils arrive first, followed by monocytes and lymphocytes
52clotting
clotting factors wall off site of infection
53pus formation
accumulation of dead neutrophils and tissue debris forms pus; a localized collection is called an abscess
54acute inflammation
short-term, mainly neutrophils; macrophages clean up debris
55chronic inflammation
if acute fails, macrophages and giant cells accumulate, forming granulomas
56necrosis
traumatic cell death due to damage
57apoptosis
programmed cell death; does not trigger inflammation
58pryoptosis and necroptosis
trigger inflammatory reponses, sacrificing infected cells
59adaptive immunity
highly specialized defense mechanism that develops to eliminate specific microbial invaders
characterized by molecular specificity, immunological memory and immune tolerance
takes around a week or more to develop after first exposure but subsequent exposures elicit much faster and stronger responses
60molecular specificity
lymphocytes recognize unique antigens
61immunological memory
enables stronger response upon re-exposure; basis of vaccination
62immune tolerance
prevents immune responses against "self" tissues
63humoral immunity
involves B lymphocytes that produce antibodies to neutralize pathogens in blood and tissue fluids
64cell-mediated immunity
involves T lymphocytes that eliminate infected or abnormal "self" cells
65cytotoxic T cells (CD8)
induce apoptosis in infected or corrupted cells
66helper T cells (CD4)
direct and assist immune responses
67primary lymphoid organs
bone marrow (B cell maturation)
thymus (T cell maturation)
68secondary lymphoid organs
sites where mature lymphocytes encounter antigens and become activated
69TCRs (T cell receptors)
require antigen presentation by MHC molecules; guided by CD markers (CD8 for cytotoxic T cells and CD4 for helper T cells)
70BCRs (B cell receptors)
membrane-anchored antibodies with two identical antigen-binding sites; bind free antigens
71secondary lymphoid organs function
serve as sites where lymphocytes gather to encounter antigens
72major secondary lymphoid organs
lymph nodes, spleen, tonsils
73peyer's patches
specialized for sampling intestinal contents
74mucosal immunity
prevents microbial invasion via mucous membranes
75clonal selection
ensures only lymphocytes with receptors specific to an encountered antigen are activated and proliferate, generating a population of clones capable of mounting an effective immune response
76mechanism of clonal selection
each B and T cell recognizes a single epitope, while activation requires antigen binding and additional signals. during expansion, activated cells multiply producing effector and memory cells
77structure of antigens
Y- shape with two identical arms (Fab regions) that bind to antigen and a stem (Fc region) that marks the antigen for elimination by immune cells
78neutralization
prevents toxins and viruses from bindint to host cells
79opsonization.
enhances phagocytosis
80complement activation
triggers the classical pathway
81immobilization
interferes with bacterial motility and adherence
82cross-linking
links antigens together
83ADCC
targets cells for destruction by NK cells
84epitopes
short amino acid sequences or three dimensional shapes recognized by antibodies
85bacterial cells
possess numerous different epitopes
86B-cell receptor structure

membrane bound antibody composed of two heavy chains and two light chains forming a Y shaped structure.
variable region: binds to specific antigen
constant region: anchors receptors to cell membrane
87B-cell activation
B cells encounter antigens in secondary lymphoid organs and upon binding antigen internalizes and processes it, presenting fragments on MHC Class II molecules. Helper T cells then recognize these fragments and activate the B cel via cytokine delivery, leading to proliferation and differentiation
88antibody regions
variable region conferrs antigen-binding specificity while constant region determines antibody class and function
89IgM
first produced during primary response
pentamer
efficient in complement activation
90IgG
most abundant immunoglobulin class
provides long term protection
crosses placenta
found in Colostrum
91IgA
dimer
important in mucosal immunity
found in secretions
92IgD
involved in antibody response development
function in serum is unclear
93IgE
bound to basophils and mast cells
important in allergic reactions and parasite defenses
94affinity maturation
B cells with higher affinity for antigen binding proliferate
95class switching
B cells switch to producing one class of immunoglobulin to another (ex IgM to IgG) to ehance the immune response
96primary response
slower and less efficient
takes 10-14 days; produces IgM first
97secondary response
faster, mediated by memory cells
produces IgG or IgA
eliminates pathogens before harm
98MHC class I
presents endogenous antigens
recognized by CD8+ cytotoxic T cells
99MHC class II
presents exogenous antigens
recognized by CD4+ helper T cells
100cytotoxic T cells
release perforin and proteases to induce apoptosis in infected cells
101helper T cells
deliver cytokines to activate B cells and macrophages
102natural killer cells
induce apoptosis in antibody-bound "self" cells and cells lacking MHC class I molecules
103antibody-dependent cellular cytotoxicity (ADCC)
NK cells recognize and kill cells coated with antibodies
104hypersensitivity
exaggerated immune response that damages host tissue
105autoimmune disease
misdirected immune response that damages host tissue
106immunodeficiency
lack of adequate immune responses
107type I hypersensitivity
immediate IgE-mediated
allergic reactions
108type II hypersensitivity
antibodies react to molecules on cell surfaces leading to cell death via complement activation or antibody-dependent cellular cytotoxicity (ADCC)
example: hemolytic transfusion
109type III hypersensitivity
immune complex-mediated
caused by formation of immune complexes bw antibodies and soluble antigens. large complexes are removed while smaller ones can lodge in blood vessels, activate complement, and trigger inflammation
ex: lupus, infective endocarditis, glomerulonephritis
110arthus reaction
localized immune complex reaction after infection of antigen into a previously immunized individual
111serum sickness
systemic immune complex disease caused by passive immunization with animal antibodies
112type IV hypersensitivity
delayed-type cell-mediated
mediated by antigen-specific T cells and peaks 2-3 days after exposure
common causes: nickel, cosmetics, latex, poison ivy
mechanism: dendritic cells present hapten-peptide complexes to T cells, leading to activation, proliferation and differentiation. memory T cells respond to subsequent exposures causing inflammation and rash
113transplant rejecfion
allografts: most common
autografts and isografts avoid rejection
xenografts evoke strong immune responses
114self-tolerance
maintained by negative selection (apoptosis) of self-reactive lymphocytes and development of regulatory T cells (Treg) that inhibit responses to autoantigens (one's own cells)
115primary immunodeficiency
congenital / genetic
116secondary immunodeficiency
acquired after birth
ex. AIDS
117localized allergic reactions
hives: skin condition with wheal and flare; blocked by antihistamines
hay fever: teary eyes, sneezing and runny nose; blocked by antihistamines
asthma: bronchial spasms, mucus; antihistamines not effective
118immunotherapy
alters immune response by inducing IgG production against allergens
IgG competes with IgE for binding, reducing allergic reactions
Omalizumab binds Fc portion of IgE, blocking its attachment to mast cells and basophils
119hemolytic disease of newborn
occurs when Rh-negative mother carries an Rh-positive fetus
if fetal RBCs enter the mother's circulation, she may develop anti-Rh antibodies. in subsequent pregnancies, maternal IgG antibodies can cross placenta and destroy fetal RBCs
treatment; RhoGAM
120Penicillin G
first antibiotic discovered by Fleming
effective against many bacteria
Chain and Florey purified penicillin and tested it clinically in 1941
WWII accelerated research and mass production
121selective toxicity
greater harm to microbes than hunan cells
122therapeutic index
lowest dose toxic to patient divided by the dose that is used for therapy
123therapeutic window
range bw therapeutic and toxic dose
124topical use
medications too toxic for systemic use can be used topically
125bacteriostatic antimicrobials
inhibit bacterial growth
host defenses must eliminate pathogens
126bactericidal antimicrobials
kill bacteria
effectiveness may depend on drug concentration and microbial growth stage
127broad-spectrum antibiotics
affect a wide range of organisms
useful for acute life threatening diseases; may disrupt microbiome
128narrow-spectrum antibiotic
affect limited range of organisms
require pathogen identification and are less disruptive to microbiome
129antagonistic interactions
medications inhibit the effects of one another
130synergistic interactions
medications enhance each other's effects
131additive interactions
combined effect equals sum of individual effects
132dysbiosis
imbalance in microbiome
ex. bacterial overgrowth
133cell wall synthesis inhibition
certain antibiotics degrade peptidoglycan
134B-lactam antibiotics
inhibit penicillin-binding proteins (PBPs) that catalyze peptide bridge formation between glycan strands
135glycopeptide antibiotics
bind to amino acid side chains of NAM molecules, blocking cross-link formation
136bacitracin
interferes with transport of peptidoglycan precursors across cytoplasmic membrane; used topically
137B-lactam antibiotic variants
differing in side chains influences spectrum and resistance properties
138penicillins
grouped by side chain modifications
natural penicillins are narrow-spectrum and susceptible to penicillinases
139penicillinase-resistant penicillins
developed to counter resistance in S. aureus
140cephalosporins
resistant to some B-lactamases; later generations more effective against Gram-negatives and MRSA
14150S subunit protein inhibitors
Lincosamides, oxazolidinones, streptogramins, pleuromutilins, chloramphenicol, macrolides
14230S subunit protein inhibitors
aminoglycosides, tetracyclines, glycylcyclines
143sulfonamides
structurally similar to PABA; competitively inhibit enzyme in folate synthesis
144trimethoprim
inhibits later step in folate synthesis
little effect on human enzymes
145synergistic combination
co-trimoxazole (trimethoprim + sulfonamide) enhances efficacy
146medication-inactivating enzymes
enzymes such as penicillinase and extended-spectrum B-lactamases degrade antibiotics
147alteration in target molecules
structural changes prevent antibiotic binding
148decreased uptake
changes in porin proteins block antibiotic entry
149increased elimination
efflux pumps remove antibiotics from cell
150summary table of antibiotic mechanisms of action