Unit 1 - Molecular Biology

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1
Nucleotide Stucture
Phosphate Group, Pentose Sugar, Nitrogenous Base
2
Nitrogenous Bases
Adenine, Guanine, Thymine, Cytosine
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What bonds hold both sides of DNA together?
Hydrogen Bonds
4
What happens during Interphase?
G1 (growth phase), S (DNA synthesis phase), G2 (cell prepares for division)
5
Cell Cycle Stages
Interphase, Prophase, Metaphase, Anaphase, Telophase, Cytokinesis
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Checkpoints during Cell Cycle
G1 (cell size and DNA damage check), G2 (DNA replication and damage check), M (DNA aligned correctly)
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Why does DNA replicate during synthesis?
Prepares for duplication of DNA to create daughter cells through mitosis
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DNA Replication
Process by which DNA creates a copy of itself
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DNA Helicase
Unzips DNA by breaking Hydrogen bonds
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SSBs (Single-stranded binding proteins)
Bind to exposed DNA single strands
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Gyrase (Topoisomerase)
Regulates unwinding of DNA
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DNA Polymerase
Creates a new strand by pairing complementary bases to template strands
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Primase
Adds a short segment of nucleotides (primers) to make RNA
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Okazaki Fragments
Fragments of DNA formed from the lagging strand
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DNA Ligase
Joins Okazaki Fragments together
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First step of DNA Replication
Helicase unwinds double helix
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Second step of DNA Replication
SSBs stabilize DNA strands while DNA Polymerase adds nucleotides and binds sugars and phosphates
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Third step of DNA Replication
Leading strand is synthesized
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Fourth step of DNA Replication
Lagging strand is synthesized discontinuously and results in short sections being copied - Okazaki Fragments
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Fifth step of DNA Replication
Okazaki Fragments are joined together by DNA Ligase
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Interphase
Cell grows, DNA replicates
22
Mitosis Stages
Prophase, Metaphase, Anaphase, Telophase
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Prophase
DNA forms chromosomes, nuclear membrane disappears, spindles form
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Metaphase
Spindles pull chromosomes to the middle
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Anaphase
Chromosomes are pulled apart
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Telophase
Chromosomes reach the poles and nuclear membrane reforms
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Cytokinesis
Cytoplasm divides, forming 2 separate cells
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Apoptosis
Programmed cell death to prevent caner cells from growing
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Enzyme Players
DNA replicators, such as DNA Polymerase, etc.
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Transcription
DNA molecule is copied into complementary strand of RNA
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mRNA
Messenger RNA transcribed from DNA
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First step of Transcription
RNA Polymerase attaches to DNA at a special sequence and signals to begin transcription
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Second step of Transcription
DNA strands are unzipped - one strand serves as a template
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Third step of Transcription
RNA bases attach to the complementary DNA
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Fourth step of Transcription
RNA Polymerase releases new mRNA molecule which takes the code to the ribosomes
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Splicing
Occurs after transcription where introns are taken out of mRNA to leave exons to code for proteins
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First step of Splicing
snRNPs (small nuclear ribonucleoproteins) bind to the intron, forcing ends to bind together
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Second step of Splicing
Spliceosomal complex cuts the mRNA at the beginning of the intron and exon
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Third step of Splicing
The exons are joined together and move out of the nucleus through nuclear pores
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Translation
Process of decoding a mRNA molecule into a protein in ribosomes
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Codons
A combination of 3 nitrogen bases on mRNA
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tRNA
Transfer RNA, holds amino acids and binds to the anticodon of mRNA to code amino acids for polypeptide chains
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Primary Protein Structure
Polypeptide amino acid chain
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R Group
Unique to each amino acid, determines the relationship the amino acid has to other amino acids and the space around it (hydrophobic, hydrophilic, etc.)
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Secondary Protein Structure
Local folds created by interactions on the backbone, does not involve R Groups
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Tertiary Protein Structure
Overall 3D structure of an amino acid polypeptide chain, where interactions based on R groups occur
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Quaternary Protein Structure
Only occurs when a protein contains more than one amino acid polypeptide chain
48
Amino Acid Structure
Carboxyl group, amino group, hydrogen, R group (side chain)
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