1Are a common cause of infectious disease and can cause some cancer
Viruses
2What are the characteristics of viruses?
-Small, acellular, DNA or RNA genome
-Obligate intracellular parasites
-Many types, infect all living organisms
-Most have limited host range specificity
-Difficult to treat clinically
3Are viruses intracellular or extracellular?
intracellular
4What are viruses classified by?
Type of nucleic acid, shape, host range, presence/absence of envelope
Assigned common enlish name
5What are the baltimore groups of viruses and what are some examples?
-Group I: double-stranded DNA viruses [HPV]
-Group II: single-stranded DNA viruses
-Group III: Double-stranded RNA viruses
-Group IV: (+) sense single-stranded RNA viruses [Coronaviruses]
-Group V: (-) sense single-stranded RNA viruses [Orthomyxoviruses]
-Group VI: Retroviruses [Lentiviruses]
-Group VII: Pararetroviruses
6What is contained within the capsid?
Nucleic acid (can be DNA or RNA, double- or single-stranded)
7What is the capsid?
protein shell
8What do some viruses possess and where is it taken from?
phospholipid envelope, host cell
9What do glycoprotein spike proteins do?
allow attachment and determine virus' host cell specificity
10What is metabolically inert until entry into host cell and its replication is dependent on host cell resources?
Virion
11What is SARS-CoV-2 and what is its genome?
Classified as coronavirus, single-stranded RNA
12How does SARS-CoV-2 infect its host?
Virus glycoprotein spike (S) must bind to transmembrane Angiotensin-Converting Enzyme 2 (ACE2) receptor on host cells
Virus enters host cell via envelope/membrane fusion
13What are the components and their functions of a bacteriophage in bacteria?
Genome: carries the genetic information necessary for replication of new phage particles
Tail sheath: retracts so that the genome can move from the head into the host cell's cytoplasm
Plate and tail fibers: attach phage to specific receptor sites on the cell wall of a susceptible host bacterium
14What are the two bacteriophage replication cycles?
Lytic: virulent
Lysogenic: temperate
15When does the infected bacteria transition from lsyogenic to lytic?
when stress induces excision of phage DNA
16In what bacteriophage replication cycle does the phage DNA integrate into host genome to form prophage?
Lysogenic cycle
17What is the process of the Lytic cycle?
1. cell synthesizes capsid proteins
2. cell replicates phage DNA, DNA is packaged into capsids
3. phage lyses cell, and progeny phages are released
18What are the two ways that animal viruses are classified?
1. Lytic (usually cause acute disease)
2. Latent (usually cause chronic disease)
19What is the first step of animal virus replication?
attatchment using viral spike binding to host cell receptor on membrane
-viral spike ability to bind host receptor determines viral specificity
-host antibodies binding viral spikes can neutralizelock attachment virus, inhibit this step
20What is the second step of animal virus replication?
entry/penetration of viral genome into host cell by endocytosis or fusion of envelope with plasma membrane of host cell
21What is the third step of animal virus replication?
uncoating of nucleic acid via capsid digestion, release of nucleic acid
22What are examples of lytic and latent virus diseases?
Lytic: influenza, common cold, rabies, COVID-19, ebola, measles
Latent: herpes simplex virus, HIV
23What is the fourth step of animal virus replication?
biosynthesis of viral proteins and genomes
24What is the fifth step of animal virus replication?
virus assembly and maturation
25What is the sixth step of animal virus replication?
release (virions exit host cell), host cell lysis
26What happens if lysis of host cell is not immediate?
viruses bud from host cell during chronic shedding of virions
27What does Human Immunodeficiency Virus (HIV-1) cause?
Acquired Immunodeficiency Syndrome (AIDS)
28What and where did HIV originate from?
zoonotic from primates, early 1900's in africa
29Where do ~80% of HIV cases take place?
T or F: Men and women are infected equally
sub-saharan africa
T
30How is HIV transmitted?
Primarily via sexual contact, also blood contact, vertical mother to child
31What is the HIV genome?
single-stranded RNA (retrovirus)
32What are the functions of reverse transcriptase, integrase, and protease?
RT: converts HIV's RNA genome into DNA
IN: inserts the viral DNA into the host genome
PR: processes viral proteins to form mature, infectious virions
33How does HIV infect cells?
Use spike protein (SUp120) to attach to CD4 receptor and CCR5 co-receptor on T-helper cells, penetrates cell via membrane-envelope fusion, uncoating releases RNA
34What is the HIV lifecycle because it is a latent virus?
RNA genome reverse transcribed to dsDNA, integrase integrates DNA into genome as provirus
provirus transcribed into viral genomes and viral mRNAs, mRNAs translated into viral pre-protein
Viral pre-protein cleaved into mature proteins by HIV protease, virus assembles, buds from, eventually lyses T-helper host cell
35What happens at the start of a HIV infection?
strong initial immune response followed by long chronic phase (9-12 years)
36What happens when the T-helper cell count gets low?
leads to opportunistic infections, onset of acute AIDS disease
death typically from opportunistic infections or cancer
37What are the four AIDS therapies?
1. Reverse transcriptase inhibitors
2. Protease inhibitors
3. Fusase
4. Integrase
38Why is combination (cocktail) therapy effective for AIDS?
reduces viral replication, prevents drug resistance, improves immune system function, delays disease progression, reduces transmission, long-term suppression
39What can individuals that are at a high risk for HIV infection take?
pre-exposure prophylaxis
40What are the two different spike proteins for influenza virus?
hemgglutinin (H), neuraminidase (N)
41How are influenza strains identified?
by H and N combination
42What are the two ways spike proteins can change?
antigenic drift, antigenic shift
43Single small mutations cause constant minor H and N spike protein changes over time (reason for yearly vaccine)
antigenic drift
44Caused by genetic reassortment between human virus and other animal (mostly pig, bird) virus(es); sudden, major shift in viral surface proteins/antigen(s)
antigenic shift