bUnit 6: Gene Expression and Regulation

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1
transformation
change in the geno/phenotype due to introduction of new DNA into the cell
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bacteriophages
viruses that infect bacteria
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virus
DNA/RNA encased by a protein capsule
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Hershey-Chase experiment
used bateriophages and tracked certain parts to see if protein or DNA had genetic meterial
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Griffith
used rats and injected them with bacteria, proving that DNA alters genes || notes:mixed pathogenic DNA with nonpathogenic bacteria cells and the nonpathogenic cells became pathogenic
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Chargaff's (2) rules
DNA base composition varies between species || notes:A:T and G:C
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Which nucleotides are purines?
A and G (pure gold)
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Which nucleotides are pyrimidines?
T and C
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Who created the modern DNA model?
Watson and Crick
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semi-conservative model (accepted model)
the strands of the parent model seperate and replicate their own half
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conservative model (not accepted)
parent strand remains together and is the template for seperate daugther strand
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dispersive model (not accepted)
the new replicated DNA is a mismatch of the parent and daugther strands
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topiosomerase
unwinds DNA and reduces stress on parent strand
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helicase
unzips the DNA
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replication fork
region where parent strands are seperated
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single-strand binding proteins
bind to the separated parent strands to prevent them from sticking back to each other
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primase
creates the primer based off of the DNA
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primer
RNA strand that serves as a starting point for DNA polymerase to attach
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DNA polymerase
creates new DNA strand and replaces the RNA primer with DNA
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leading strand
elongates continuously towards the replication fork
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lagging strand
elongates in sections with Okazaki fragments away from the replication fork
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DNA ligase
'fuses' the new and old strand together
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Nucleotides are added...
5' --> 3', to the 3' end
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What proofreads DNA?
DNA polymerase
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mutations
permanent change to DNA
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nucleotide excision repair
nuclease cuts away the damaged DNA, DNA polymerase replaces them with new DNA, and DNA ligase glues everything together
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nuclease
enzyme that cuts away damaged DNA
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transcription
creating RNA based off of DNA
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Is DNA made up of two RNA strands?
no
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mRNA
messenger RNA
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pre-mRNA
(eukaryotes) mRNA with introns
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translation
translating mRNA to make protein
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Where is translation done?
ribosome
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In what kind of -yote can transcription and translation happen at the same time?
prokaryote
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Where does transcription happen in prokaryotes?
cytoplasm
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Where does transcription happen in eukaryotes?
nucleus
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primary transcript
pre-mRNA
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central dogma
direction flow of genetic info || notes:DNA => RNA => protein
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triplet code
3 nucleotides that code amino acids
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codon
mRNA triplet code
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anticodon
opposite mRNA triplet code, tRNA codon
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codon table
table that shows that triplets of RNA nucleotides code for what amino acid
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RNA polymerase
opens DNA and makes RNA strand based off of DNA template strand
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promoter
DNA that indicates the starting point for transcription
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transcription unit
length of DNA that is transcribed
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transcription factors
proteins that aids RNA polymerase attachment
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transcription initiation complex
transcription units + promoter + RNA polymerase
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What does the transcription complex create?
pre-mRNA
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What direction does transcription happen?
3' --> 5'
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RNA processing
changing pre-mRNA into mRNA
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What is done during RNA processing?
introns are removes, methyl cap is added to 5' end, poly-A tail is added to 3'
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What purpose do the methyl cap and poly-A tail serve?
act as a buffer for the mRNA as it travels to the ribosome
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What -yote has the pre-mRNA?
eukaryote
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introns
non-coding RNA
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exons
coding RNA
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splicesome
removes introns from pre-mRNA and joins the exons together
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tRNA
transfer RNA, translates mRNA codons into proteins
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Where is the amino acid attached to the tRNA?
the top
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What are the 3 sites for translation in the ribosome?
What are the 3 sites for translation in the ribosome?
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P translation site
principal, first
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A translation site
attachment, where tRNA holds the polypeptide chain
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E translation site
exit
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rRNA
ribosomal RNA, basically the ribosome
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What is another name for DNA synthesis?
Protein synthesis
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How many rings do purines have?
2
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How many rings do pyrimidines have?
1
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How are nucleotide bases connected?
hydrogen bonds between one ring (pyrimidine) and two rings (purine)
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