1What are affinity and avidity?
measures of antibody binding strength, and are important characteristics of the immune response
2what is affinity?
The strength of a single antibody-antigen interaction. ex: antibodies with high affinity bind more strongly and stably.
3what is avidity?
the total strength of all interactions between an antibody and an antigen.
4which is greater: affinity or avidity?
avidity is always greater than affinity.
5What are factors that affect affinity and avidity?
# binding sites, structural arrangements
6How many binding sites does IgE have?
2 binding sites
7How many binding sites does IgM have?
10 binding sites
8How many binding sites does IgG have?
2 binding sites
9Out of all of the immunoglobulins, which one has high affinity?
IgG
10which is the most common type of antibody used in molecular and cell biology?
IgG
11What is Sensitivity? (associated with antibodies)
the test's ability to correctly identify those with antibodies (true positives)
12What is Specificity? (associated with antibodies)
the test's ability to identify those without the antibodies (true negative)
13A test has 50% sensitivity and 100% specificity. what does this mean?
the test correctly identified 25 out of 50 patient with the disease, and all 50 healthy people.
14A test has 100% sensitivity and 50% specificity. what does this mean?
this means that the test correctly identified all 50 patients with the disease, but only 25 out of the 50 healthy people.
15A test has 90% sensitivity and 80% specificity. What does this mean?
this means that 90% of people with the disease tested positive, and 80% of people without the disease tested negative.
16when choosing a test, what is important to consider?
both sensitivity and specificity
17A test with high specificity is good for?
Confirming a disease if a test result is positive, but it's still possible for people to get a negative test result when they actually have the disease.
18What are the 6 different types of biohazardous waste and containers associated?
Sharpes
Biohazard
Trace Chemo
RCRA Hazard
Pharmaceutical
Radioactive
19What are the 2 types of treponemal tests?
Direct Detection
and
Serological Tests
20Direct Detection of Treponemal Tests detects?
Primary and secondary syphillius --diagnosed by presence of T. pallidum in exudates of skin lesions
21What assays are under direct detection of treponemal test?
Dark-field microscopy and Fluorescent antibody testing
22What is dark-field microscopy?
dark condensor - light need to do ASAP
23What is fluorescent antibody testing?
flueorescent labeled Ab to conjugate to T. pallidum
24When should serological tests be used for treponemal testing?
no active lesions, may be secondary or teritary syphillis - need to test for Abs.
25What are the 2 serological tests for treponemal?
nontreponemal and treponemal
26What does nontreponemal tests determine?
determine presence of Ab (reagin) that forms against cardiolipin, lipid material released in damaged cells.
27What is flocculation?
specific types of precipitation that occurs over a narrow range of antigen concentrations.
28What is Rapid Plasma Reagin (RPR) test? how does it work?
modified VDRL test involving agglutination; The cardiolipin -- containing antigen suspension is bound to charcoal particles. Check to titer.
29What is the treponemal serological test? what should be used for confirmation?
Detects antibodies to T. pallidium or specific antigens; positive nontreponemal (screening) must be confirmed.
30What are the 2 types of treponemal serological tests?
1. Fluorescent treponemal antibody absorption (FTA-ABS)
2. Agglutination tests
31what does1. Fluorescent treponemal antibody absorption (FTA-ABS) use?
uses slide with green gluorescent labeled antibody - for positive result (shows Ab present)
32What is an agglutination test for treponemal?
T. Pallidium Particle Agglutination (TP-PA)
33What is T. Pallidium Particle Agglutination (TP-PA)?
colored gelatin particles to coated with trep antigens
34What are the different types of hemagglutination testing?
Direct agglutination
Indirect (passive) agglutination
Reverse passive
Agglutination Inhibition
Hemagglutination Inhibition
35What happens in direct agglutination?
occurs when antigens are found naturally on a particle
36What does it mean when agglutination happens in direct agglutination?
indicates presence of patient antibody
37What happens in indirect (passive) agglutination?
employs particles that are COATED with antigens not normally found on their surfaces
38What does agglutination in indirect (passive) agglutination indicate?
indicates presence of patient antibody
39What can indirect (passive) agglutination detect?
can detect antibodies to viruses
40What happens in reverse passive testing?
antibdoy rather than antigen is attached to carrier particle. Particles coated with reagent antibody.
41What does agglutination in reverse passive testing?
agglutination indicates presence of patient antibody.
42What happens in agglutination inhibition testing?
haptens attached to carrier particles. Rxn based on inhibition of agglutination due to competition with a soluble antibody.
43Lacking of agglutination in agglutination inhibition indicates what?
POSITIVE test - indicating presence of patient ANTIGEN
44What happens in hemagglutination inhibition?
reaction uses same principle as agglutination inhibition except RBCs are indicator particles
45Lacking of agglutination in hemagglutination inhibition indicates what?
POSITIVE test - indicating presence of patient ANTIBODY
46What is the bloodborne pathogen exposure control plan? and what are the component?
written plan to provide necessary protection, free of charge.
Components to plan:
1. Engineering Controls - sharps disposal etc.
2. Work Practice Controls - standard precautions
3. Personal Protective Equipment
4. Medical - hep. B vaccine free of charge
5. Documentation - annual training
47what is the human microbiome?
collection of microorganisms on the human body
48what are the 3 diffferent types of symbiotic relationship between humans and bacteria?
1. Commensalistic
2. Mutualistic
3. Parasitic
49What is a Commensalistic relationship?
no apparent benefit or harm to either
50What is a Mutualistic relationship?
both humans and bacteria benefit from each other
51What is a Parasitic relationship?
bacteria result in harm to the host
52What is the hosts protective mechanism against bacteria?
Immune Defense Mechanisms
1. first line of defense against pathogens - skin and mucosal surface
2. Skin has enzymes and antimicrobial defense peptides
3. Acute phase reactants like CRP - activates complement and promotes phagocytosis
4. Adaptive immune response produces antibodies against bacterial antigens and exotoxins.
53what is an alternative to disinfect work station/desk in the absence of disinfectant spray?
Sodium hypochlorite (household bleach) 1:10 dilution
54What are the 3 different zones of a precipitation curve?
Prozone, zone of equivalence, and postzone
55What is the Prozone?
excess of antibody, suboptimal ppt. too many Abs for lattice formation
56What is the zone of equivalence?
optimal ratio of antibody to antigen, results in optimal ppt.
57What is the postzone?
excess of antigen, suboptimal ppt.
58What is the difference between precipitation and agglutination?
PPT involves SOLUBLE antigens, while
agglutination involves PARTICULATE antigens
59What is preciptiation?
formation of visible solid ppt when soluble antigens bind to their specific antibodies
60What is agglutination?
clumping together of particulate antigens (like cells) due to binding with specific antibodies, essentially creating clumps instead of ppt.
61What enzymes are used to detect H.Pylori infections?
UREASE
62Which genes have a higher risk of devloping gastri/peptic or gastric carcinoma?
Produces protein CagA and a vacuolating cytotoxin, or VacA
63What is UREASE?
Enzyme that provides a buffer zone around the bacteria that protects it from the effects of stomach acid.
64What tests are used to detect H.Pylori infections?
Detect urease from stomach biopsy
CLO detects urease activity in gastric mucosal biopsies - gell turns HOT pink due to increase in pH
Urea Breath Test
65What is the difference between endo and exotoxins?
Endotoxin (lipid A) is found in the LPS layer of cell wall of gram
Exotoxin are protein moleucles released from the living bacteria
66What is another name for endotoxin?
lipid A
67What is an endotoxin?
a toxin found in the LPS (lipopolysaccharide) layer of cell wall of gram - bacteria.
When cell dies - it releases the Lipid A in host
Causes host response to release cytokines, TNF, and platelet activating factor.
68What is an exotoxin?
specific and targeted activity.
Protein molecules released from living bacteria (mostly gram + bacteria) and considered most potent molecules known to harm living moleulces.
Neurotoxins, cytotoxins, enterotoxins
Exotoxins bind to specific receptors on host cells that activate specific activity of a toxin.
69What are the 3 different types of red plastic biohazard containers?
1. sharps
2. biohazards
3. pathological
70What do sharp container contain?
piercing skin biohazard waste
71What do biohazard containers contain?
anything contaminated with blood or biohazard material
72what do patholgical containers contain?
tissues organs, fluids, and body parts
73What is specificity?
proportion of people who DO NOT have the disease and who have a negative test
74What is the formula for sensitivity?
True positives / (true positives + false negatives)
75What is the formula for specificity?
True negatives / (true negatives + false positives)
76What chart is this?

Levey-Jennings Charts
77How are the control limits calculated for a Levey-Jennings Chart?
uses the calculated standard deviation (or known SD)
78What is California's Laboratory Regulatory body?
California dept of health, Laboratory Field Service (STATE LEVEL)
79What make serological for H.pylori so difficult?
May remain positive for years, which decreases the specifity of these tests confirming active or eradicated infection.
80What is Group A Streptococci (GAS)?
One of the most common pathogenic bacteria and causes a variety of diseases
81what is M-protein?
the major virulence factor of GAS has a net negative charge at the amino-terminal end that helps inhibit phagocytosis
-limits deposition of C3 on the bacterial surface, diminishing complement.
82What test/assay are sandwich phenomenon seen in?
Capture assay
83What is the Capture Assay?
1. Sandwich immunoassay
2. Ab (rather than ag) is bound to the solid phase during incubation
3. Enzyme labeled Ab added and attaches to available patient Ab
4. Sandwich is formed
5. Enzyme activity directly proportional to amount of Ab.
84How do you diagnose syphillus and what test?
Nontreponemal tests first (RPR) or VDRL first (screening test)
if positive nontrep test then Treponemal tests
85What does treponemal tests detect?
Ab against T. pallidium or antigens
86What are the 2 types of treponemal tests?
1. Fluorescent treponemal antibody absorption (FTA-ABS)
2. Agglutination Tests (TP-PA)
87What do you do when there's an intermediate result in western blot testing?
HIV screening tests are known to have false positives. Specimens with some bands, but do not meet criteria. REPEAT WB AGAIN; IF STILL INDETERMINATE THEN REPEAT WB AGAIN IN ABOUT 4-6 WEEKS USING A NEW SPECIMEN
88What is western blot used for? example.
confirmatory test for a positive HIV Ab screen test (ELISA)
89What does a HIV Ab screening test (ELISA) utilize?
Utilizes nitrocellulose or nylon strips contrining individaul HIV proteins that separate gel electrophoeses and blotted onto test.
90what happens when the screening test is positive for HIV? (specific)
antibodies move across strip.
91what is affinity?
the strength of a single bond or interaction between two molecules at a specific binding site.
92what is avidity?
the total strenght of all non-covalent interactions between 2 species that interact multivalently . Avidity takes into account multiple binding sites or interactions.
93What type of antibodies have high affinity and low avidity?
antibodies with fewer binding sites have high affinity and low avidity.
94What is hemagglutination?
agglutination reactions involving RBCs
95What is ABO blood typing?
patient RBCs are mixed with antisera of IgM type can be used to determine the presence of absence of the A and B antigens.
96what are examples of cassette assay (immunochromatography)
rapid covid, and pregnancy test
97What are the steps in immunochromatographic assay?
1. Patient sample is added to a cassette containing antibody labeled with colodial gold.
2. Sample combines with antibody and is moved along by capillary flow.
3. Monoclonal antibody to the analyte captures the patient antigen attached to gold-labeled antibody.
4. Control line has antibody tha captures collodial gold-labeled antibody
98what type of Ab is rheumatoid factor?
IgM